Method Overview
Here, we show all of collected simulation methods, their basic information and the links of usage documentation. We hope it will help you to learn the usage of the method that satisfies your simulation requirements and benefit for your research.
The Table of Simulation Methods
| ID | Method | Vignette | Language | URL | DOI | Journal |
|---|---|---|---|---|---|---|
| 1 | BASiCS |  |
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PLoS Computational Biology |
| 2 | BEARscc | |
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Nature Communications |
| 3 | CancerInSilico | |
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PLoS Computational Biology |
| 4 | dropsim | |
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| 5 | dyngen | |
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Nature Communications |
| 6 | dyntoy | |
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| 7 | ESCO | |
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Bioinformatics |
| 8 | ESCO-traj | |
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Bioinformatics |
| 9 | ESCO-tree | |
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Bioinformatics |
| 10 | hierarchicell | |
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BMC Genomics |
| 11 | Kersplat | |
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Genome Biology |
| 12 | Lun | |
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Genome Biology |
| 13 | Lun2 | |
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Genome Biology |
| 14 | MFA | |
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Wellcome Open Research |
| 15 | muscat | |
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Nature Communications |
| 16 | phenopath | |
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bioRxiv |
| 17 | POWSC | |
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Bioinformatics |
| 18 | powsimR | |
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Bioinformatics |
| 19 | PROSSTT | |
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Bioinformatics |
| 20 | scDD | |
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Genome Biology |
| 21 | scDesign | |
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Bioinformatics |
| 22 | scDesign2 | |
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Genome Biology |
| 23 | scDesign3 | |
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Nature Biotechnology |
| 24 | scDesign3-tree | |
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Nature Biotechnology |
| 25 | scGAN | |
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Nature Communications |
| 26 | scMultiSim | |
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bioRxiv |
| 27 | scMultiSim-tree | |
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bioRxiv |
| 28 | SCRIP-BGP-commonBCV | |
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Bioinformatics |
| 29 | SCRIP-BGP-trendedBCV | |
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Bioinformatics |
| 30 | SCRIP-BP | |
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Bioinformatics |
| 31 | SCRIP-GP-commonBCV | |
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Bioinformatics |
| 32 | SCRIP-GP-trendedBCV | |
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Bioinformatics |
| 33 | SCRIP-paths | |
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Bioinformatics |
| 34 | SimBPDD | |
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Annales Mathematicae et Informaticae |
| 35 | Simple | |
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Genome Biology |
| 36 | SparseDC | |
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Nucleic Acids Research |
| 37 | SPARSim | |
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Bioinformatics |
| 38 | Splat | |
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Genome Biology |
| 39 | Splat-paths | |
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Genome Biology |
| 40 | SplatPop | |
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Genome Biology |
| 41 | SplatPop-paths | |
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Genome Biology |
| 42 | SPsimSeq | |
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Bioinformatics |
| 43 | SRTsim | |
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Genome Bilogy |
| 44 | SymSim | |
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Nature Communications |
| 45 | TedSim | |
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Nucleic Acids Research |
| 46 | VeloSim | |
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bioRxiv |
| 47 | zinbwave | |
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Nature Communications |
| 48 | zinbwaveZinger | |
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Genome Biology |
| 49 | zingeR | |
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Genome Biology |